PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01674.1_g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 101aa    MW: 11583.1 Da    PI: 11.0956
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01674.1_g00016.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.34.2e-2568451128
                      NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              +k+++++w+fF++ + ++a+g r++r t++gyWkatg+   v+s+ +++ +g k+t+vfykgrap+g+kt+W m+ey++
  Sme2.5_01674.1_g00016.1   6 IKNDSEQWFFFIPIQDREARGGRPTRLTTQGYWKATGTPGFVFSSnNNRIIGGKRTMVFYKGRAPNGKKTQWKMNEYKA 84 
                              566788*************************************9867778***************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.51101IPR003441NAC domain
SuperFamilySSF1019415.75E-25789IPR003441NAC domain
PfamPF023653.6E-111283IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MAGEVIKNDS EQWFFFIPIQ DREARGGRPT RLTTQGYWKA TGTPGFVFSS NNNRIIGGKR  60
TMVFYKGRAP NGKKTQWKMN EYKASTQRDP SINNNHPTNL K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-15118371141NO APICAL MERISTEM PROTEIN
1ut4_B5e-15118371141NO APICAL MERISTEM PROTEIN
1ut7_A5e-15118371141NO APICAL MERISTEM PROTEIN
1ut7_B5e-15118371141NO APICAL MERISTEM PROTEIN
3swm_A6e-15118374144NAC domain-containing protein 19
3swm_B6e-15118374144NAC domain-containing protein 19
3swm_C6e-15118374144NAC domain-containing protein 19
3swm_D6e-15118374144NAC domain-containing protein 19
3swp_A6e-15118374144NAC domain-containing protein 19
3swp_B6e-15118374144NAC domain-containing protein 19
3swp_C6e-15118374144NAC domain-containing protein 19
3swp_D6e-15118374144NAC domain-containing protein 19
4dul_A5e-15118371141NAC domain-containing protein 19
4dul_B5e-15118371141NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-112HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161530.11e-62PREDICTED: NAC domain-containing protein 90-like
SwissprotQ9M2903e-37NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBLK4CR451e-59K4CR45_SOLLC; Uncharacterized protein
STRINGSolyc09g010160.1.13e-59(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24942357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.12e-38NAC domain containing protein 61